Study of Mid-Blastula Transition of zebrafish embryos

Direct links to NCBI, no account and no request form: the whole study as GSE32914_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 10 samples.

Also filed as BioProject PRJNA146543. Searching any of these in the dataset finder brings you back here.

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• GSE106466 Single-cell RNAseq (SMART-seq2) of wild-type (TLAB) and MZoep (tz57) zebrafish embryos at 50% epiboly stage 416 samples
• GSE162415 Temporal transcriptome in Pou5f3, Nanog and Sox19b mutant zebrafish embryos 232 samples
• GSE147112 Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition 114 samples
• GSE137424 Temporal transcriptome in Pou5f3 and Sox19b mutant zebrafish embryos 101 samples
• GSE84601 RNA-seq analysis comparing WT, Rad21 MO and CTCF MO zebrafish embryos at stages (2.5, 3.3, 4.5, 5.3, 10 hpf) pre and post ZGA (zygotic genome activation) 45 samples
• GSE106474 Drop-seq analysis of wild-type (TLAB) zebrafish embryos from high to 6-somite stage (12 timepoints) 28 samples
• GSE292682 Transcriptome profiling of tendon fibroblasts at the onset of embryonic muscle contraction reveals novel force-responsive genes. FAC sorted tenocytes from 36 hpf vs. 48 hpf zebrafish embryos bulk RNAseq dataset 11 samples
• GSE22830 High-throughput sequencing of mRNA from oocyte, 1 cell, 16/32 cells, 128/256 cells, 3.5hpf and 5.3hpf zebrafish embryos (Wild type; AB line) 6 samples

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