Genome-wide gene expression profiling of mesenchymal stem cells, osteosarcoma cells, and osteosarcoma cell lines.
Expression microarray · human · 118 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- OsteosarcomaThis series is part of our curated briefing on it.
- Samples
- 118 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE42352_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA181139. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 118 more — browse all 118 samples with per-sample file links →
- GSE21257 Genome-wide gene expression profiling on pre-chemotherapy biopsies of osteosarcoma patients who developed metastases within 5yrs (n=34) and patients who did not develop metastases within 5yrs (n=19) 53 samples same disease briefing · shares osteosarcoma, genome-wide
- GSE207333 Analysis of lncRNA-mRNA co-expression profiles in CD133 positive cancer stem-like cells from osteosarcoma cell line Saos-2 12 samples same disease briefing · shares osteosarcoma, stem
- GSE297211 PDK1 regulates metabolic balance in osteosarcoma stem cells 15 samples same disease briefing · shares osteosarcoma, stem
- GSE255956 BRD4 Regulates Gemcitabine Efficacy by Modulating Autophagy Activity in Osteosarcoma Cells [Cell lines] 10 samples same disease briefing · shares osteosarcoma, lines
- GSE268670 SPRR1A is a potential therapeutic target for osteosarcoma: in vitro and in vivo evaluations using novel generated artificial osteosarcoma cancer stem cell-like cells 3 samples same disease briefing · shares osteosarcoma, stem
- GSE218036 Transcriptome analysis of osteosarcoma cell lines treated with FDA-approved drugs 18 samples same disease briefing · shares osteosarcoma, lines
- GSE19276 Osteosarcoma is characterized by impaired osteoclastogenesis and antigen presentation compared to normal bone 49 samples same disease briefing · shares osteosarcoma
- GSE126209 Gene expression profiling in Osteosarcomas 23 samples same disease briefing · shares osteosarcoma
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.