Connectivity Map dataset (build01)
Expression microarray · human · 564 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 564 samples: 354 distinct titles, 8 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE5258_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA96479. Searching any of these in the dataset finder brings you back here.
How we read this: Read from the first 400 of 564 sample titles: 354 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM118720 EC2003090503AA
- GSM118721 EC2003090502AA
- GSM118722 EC2003090504AA
- GSM118723 EC2003090505AA
- GSM118724 EC2003090506AA
- GSM118725 EC2003091104AA
- GSM118726 EC2003091102AA
- GSM118727 EC2003091105AA
- GSM118728 EC2003091106AA
- GSM118729 EC2003091103AA
- GSM118730 EC2003092303AA
- GSM118731 EC2003092302AA
- GSM118732 EC2003092304AA
- GSM118733 EC2003092305AA
- GSM118734 EC2003092306AA
- GSM118735 EC2003092503AA
- GSM118736 EC2003092502AA
- GSM118737 EC2003092504AA
- GSM118738 EC2003092505AA
- GSM118739 EC2003092506AA
- GSM118740 EC2003100103AA
- GSM118741 EC2003100102AA
- GSM118742 EC2003100104AA
- GSM118743 EC2003100105AA
- GSM118744 EC2003100106AA
- GSM118745 EC2003100203AA
- GSM118746 EC2003100202AA
- GSM118747 EC2003100205AA
- GSM118748 EC2003100206AA
- GSM118749 EC2003103003AA
- GSM118750 EC2003103002AA
- GSM118751 EC2003103004AA
- GSM118752 EC2003103005AA
- GSM118753 EC2003103006AA
- GSM118754 EC2003110403AA
- GSM118755 EC2003110402AA
- GSM118756 EC2003110404AA
- GSM118757 EC2003110405AA
- GSM118758 EC2003110406AA
- GSM118759 EC2003120403AA
+ 524 more — browse all 564 samples with per-sample file links →
- GSE288172 Influence of NIPBL Knockdown-Induced Alterations in Cohesin Loop Extrusion on CTCF Loops, Enhancer-Promoter Connectivity, and PRC Domain Contacts During hESC Differentiation into Pancreatic Lineages 263 samples shares connectivity
- GSE305337 Patient-Specific Pharmacogenomics demonstrates xCT as Predictive Therapeutic Target in Colon Cancer with Possible Implications in Tumor Connectivity 73 samples shares connectivity
- GSE309187 Poising and connectivity of emergent human developmental enhancers in the transition from naive to primed pluripotency 26 samples shares connectivity
- GSE240597 Connectivity Mapping-based Identification and Pre-clinical Evaluation of ISOX: A Novel Therapeutic for Pancreatic Cancer 24 samples shares connectivity
- GSE300506 Neuro-Glioblastoma Connectivity: Brain-Wide Mapping and Cholinergic Modulation of Tumor Progression 21 samples shares connectivity
- GSE282524 Aberrant Neuronal Connectivity and Network Activity of Neurons Derived from Patients with Idiopathic Schizophrenia 14 samples shares connectivity
- GSE309124 Poising and connectivity of emergent human developmental enhancers in the transition from naive to primed pluripotency - CUT&Tag 12 samples shares connectivity
- GSE309123 Poising and connectivity of emergent human developmental enhancers in the transition from naive to primed pluripotency - RNA-seq 9 samples shares connectivity
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.