Systematic Identification of Defined Conditions for Induction and Maintenance of Naive Human Pluripotency
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 13 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 13 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE59435_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA255305 and SRA study SRP044342. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 13 more — browse all 13 samples with per-sample file links →
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- GSE309123 Poising and connectivity of emergent human developmental enhancers in the transition from naive to primed pluripotency - RNA-seq 9 samples shares pluripotency, naive
- GSE341168 Systematic identification of age-related microbiome metabolites that impact the brain - hCMEC screen 138 samples shares systematic
- GSE279285 Systematic characterization of the composition and dynamics of processing body-associated mRNAs 597 samples shares systematic
- GSE279168 Systematic characterization of the composition and dynamics of processing body-associated mRNAs [dataset 1] 458 samples shares systematic
- GSE280530 Systematic identification and characterization of high efficiency Cas9 guide RNAs for therapeutic targeting of ADAR 54 samples shares systematic
- GSE319887 Friedreich’s ataxia transcriptomic dysregulation and identification of cell type-specific biomarkers: A systematic review and meta-analysis 43 samples shares systematic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.