Transcriptional architecture of synaptic communication delineates cortical GABAergic neuron identity
RNA-seq (gene expression) · mouse · 46 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 46 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE92522_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA357913 and SRA study SRP095282. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 46 more — browse all 46 samples with per-sample file links →
- GSE302303 Loss of Alg13 Impairs Postnatal GABAergic Cortical Interneuron Development 18 samples shares gabaergic, cortical, neuron
- GSE263082 Nr4a1 regulates cell-specific transcriptional programs in inhibitory GABAergic interneurons 34 samples shares gabaergic, neuron
- GSE275841 MYC-Driven Gliosis Impairs Neuron-Glia Communication in Amyotrophic Lateral Sclerosis 32 samples shares communication, neuron
- GSE255103 Temporal control of progenitor competence shapes maturation in GABAergic neuron development in mice 18 samples shares gabaergic, neuron
- GSE256423 The neuronal architecture of autonomic dysreflexia 13 samples shares architecture, neuron
- GSE261596 Evaluation of altered cell-cell communication between glia and neurons in the hippocampus of 3xTg-AD mice at two time points 12 samples shares communication, neuron
- GSE327170 Skin-resident Langerhans Cells Drive Neuropathic Pain via Chemokine-Dependent Neuron-Immune Communication 12 samples shares communication, neuron
- GSE249687 Three-dimensional chromatin architecture in DRG neurons following sciatic nerve injury in WT and Rad21 KO mice. 52 samples shares architecture, neuron
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.