Expression profiling of etoposide-induced senescent cells
RNA-seq (gene expression) · human · 6 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 6 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE99028_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA387040 and SRA study SRP107235. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 6 more — browse all 6 samples with per-sample file links →
- GSE297404 Gene expression profiling of senescent and non-senescent BPH epithelial cells 6 samples shares senescent
- GSE284666 SenCat: Redefining human cell senescence through multiomic profiling of multiple senescent cell types 190 samples shares senescent
- GSE305002 The effect of NDUFA5 expression on bystander cells cultured in conditioned media of chemotherapy-induced senescent cells 18 samples shares senescent
- GSE304272 Transcriptomic profiling of irradiated senescent IMR90 cells treated with CDK4/6 or JAK inhibitors 12 samples shares senescent
- GSE207816 Chromatin reorganization drives expression of functional maturation genes in senescent pancreatic beta cells (Series1 - Transcriptome) 12 samples shares senescent
- GSE156448 Transcriptomic profiling of human senescent cells upon medicinal intervention with ginkgo boliba extract or rattan tea extract 12 samples shares senescent
- GSE173592 Transcriptomic profiling of senescent human blood vessel cells upon medicinal intervention with ginkgo boliba extract or rattan tea extract 12 samples shares senescent
- GSE190280 Transcriptomic profiling of senescent human stromal cells upon medicinal intervention with dihydromyricetin 9 samples shares senescent
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.