Relaxin Attenuates the Genomic Actions and Biological Effects of Estrogens in the Myometrium by Reducing Estrogen Receptor Alpha Phosphorylation [ChIP-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 32 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 16 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Relaxin Modulates the Genomic Actions and Biological Effects of Estrogen in the MyometriumbioRxiv : the preprint server for biology · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE244841_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1024997 and SRA study SRP464951. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 16 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7830654 Input_Veh_replicate1 Input_Veh
- GSM7830655 Input_Veh_replicate2 Input_Veh
- GSM7830656 Input_E2_replicate1 Input_E2
- GSM7830657 Input_E2_replicate2 Input_E2
- GSM7830658 Input_Rln_replicate1 Input_Rln
- GSM7830659 Input_Rln_replicate2 Input_Rln
- GSM7830660 Input_E2Rln_replicate1 Input_E2Rln
- GSM7830661 Input_E2Rln_replicate2 Input_E2Rln
- GSM7830662 ER_Veh_replicate1 ER_Veh
- GSM7830663 ER_Veh_replicate2 ER_Veh
- GSM7830664 ER_E2_replicate1 ER_E2
- GSM7830665 ER_E2_replicate2 ER_E2
- GSM7830666 ER_Rln_replicate1 ER_Rln
- GSM7830667 ER_Rln_replicate2 ER_Rln
- GSM7830668 ER_E2Rln_replicate1 ER_E2Rln
- GSM7830669 ER_E2Rln_replicate2 ER_E2Rln
- GSM7830670 H3K4me1_Veh_replicate1 H3K4me1_Veh
- GSM7830671 H3K4me1_Veh_replicate2 H3K4me1_Veh
- GSM7830672 H3K4me1_E2_replicate1 H3K4me1_E2
- GSM7830673 H3K4me1_E2_replicate2 H3K4me1_E2
- GSM7830674 H3K4me1_Rln_replicate1 H3K4me1_Rln
- GSM7830675 H3K4me1_Rln_replicate2 H3K4me1_Rln
- GSM7830676 H3K4me1_E2Rln_replicate1 H3K4me1_E2Rln
- GSM7830677 H3K4me1_E2Rln_replicate2 H3K4me1_E2Rln
- GSM7830678 H3K27ac_Veh_replicate1 H3K27ac_Veh
- GSM7830679 H3K27ac_Veh_replicate2 H3K27ac_Veh
- GSM7830680 H3K27ac_E2_replicate1 H3K27ac_E2
- GSM7830681 H3K27ac_E2_replicate2 H3K27ac_E2
- GSM7830682 H3K27ac_Rln_replicate1 H3K27ac_Rln
- GSM7830683 H3K27ac_Rln_replicate2 H3K27ac_Rln
- GSM7830684 H3K27ac_E2Rln_replicate1 H3K27ac_E2Rln
- GSM7830685 H3K27ac_E2Rln_replicate2 H3K27ac_E2Rln
- GSE309118 Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in mice 42 samples shares attenuates, receptor
- GSE333586 Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Left Ventricle) 26 samples shares attenuates, receptor
- GSE301765 Deletion of AT1a (Angiotensin II Type 1a) Receptor or Inhibition of Angiotensinogen Synthesis Attenuates Thoracic Aortopathies in Fibrillin1C1041G/+ Mice 26 samples shares attenuates, receptor
- GSE302020 Biological processes in hind paws, dorsal root ganglia and spinal cord of lymphotoxin-beta receptor (LTβR) agonist treated mice 24 samples shares biological, receptor
- GSE309115 Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in mice [RNA-seq AVITI] 24 samples shares attenuates, receptor
- GSE309404 Antagonizing Il10 and Il4 signaling via intracerebral decoy receptor expression attenuates Aβ accumulation 23 samples shares attenuates, receptor
- GSE333587 Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Kidney) 19 samples shares attenuates, receptor
- GSE309117 Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in mice [RNA-seq Illumina] 18 samples shares attenuates, receptor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.