Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in mice [RNA-seq Illumina]
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in miceToxicological sciences : an official journal of the Society of Toxicology · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE309117_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1333992 and SRA study SRP626418. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9261426 WT 0hr 1 WT 0h
- GSM9261427 WT 0hr 2 WT 0h
- GSM9261428 WT 0hr 3 WT 0h
- GSM9261429 KO 0hr 1 KO 0h
- GSM9261430 KO 0hr 2 KO 0h
- GSM9261431 KO 0hr 3 KO 0h
- GSM9261432 WT 6hr 1 WT 6h
- GSM9261433 WT 6hr 2 WT 6h
- GSM9261434 WT 6hr 3 WT 6h
- GSM9261435 KO 6hr 1 KO 6h
- GSM9261436 KO 6hr 2 KO 6h
- GSM9261437 KO 6hr 3 KO 6h
- GSM9261438 WT 24hr 1 WT 24h
- GSM9261439 WT 24hr 2 WT 24h
- GSM9261440 WT 24hr 3 WT 24h
- GSM9261441 KO 24hr 1 KO 24h
- GSM9261442 KO 24hr 2 KO 24h
- GSM9261443 KO 24hr 3 KO 24h
- GSE309118 Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in mice 42 samples shares egfr, acetaminophen-induced, hepatocyte-specific, attenuates, epidermal, receptor, deletion
- GSE309115 Hepatocyte-specific epidermal growth factor receptor (EGFR) deletion attenuates acetaminophen-induced liver injury in mice [RNA-seq AVITI] 24 samples shares egfr, acetaminophen-induced, hepatocyte-specific, attenuates, epidermal, receptor, deletion
- GSE301765 Deletion of AT1a (Angiotensin II Type 1a) Receptor or Inhibition of Angiotensinogen Synthesis Attenuates Thoracic Aortopathies in Fibrillin1C1041G/+ Mice 26 samples shares attenuates, receptor, deletion
- GSE305543 Hepatocyte-specific MET deletion exacerbates acetaminophen-induced hepatotoxicity in mice 18 samples shares acetaminophen-induced, hepatocyte-specific, deletion
- GSE288368 Deletion of sphingosine 1-phosphate receptor 1 in myeloid cells reduces hepatic inflammatory macrophages and attenuates MASH 12 samples shares attenuates, receptor, deletion
- GSE333586 Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Left Ventricle) 26 samples shares attenuates, receptor
- GSE309404 Antagonizing Il10 and Il4 signaling via intracerebral decoy receptor expression attenuates Aβ accumulation 23 samples shares attenuates, receptor
- GSE333587 Formylpeptide Receptor Activation Attenuates Renovascular Remodeling in Neurogenic Hypertension (Kidney) 19 samples shares attenuates, receptor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.