Atf3 Deficiency Promotes Mesodermal Commitment and Enhances Endothelial Differentiation in Embryonic Stem Cells
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 8 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE306049_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1309020 and SRA study SRP610415. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 8 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9192083 Mes cells day 0 rep 1 Mes cells day 0
- GSM9192084 Mes cells day 0 rep 2 Mes cells day 0
- GSM9192085 Mes cells day 0 rep 3 Mes cells day 0
- GSM9192086 Mes cells day 3 rep 1 Mes cells day 3
- GSM9192087 Mes cells day 3 rep 2 Mes cells day 3
- GSM9192088 Mes cells day 3 rep 3 Mes cells day 3
- GSM9192089 Mes cells day 6 rep 1 Mes cells day 6
- GSM9192090 Mes cells day 6 rep 2 Mes cells day 6
- GSM9192091 Mes cells day 6 rep 3 Mes cells day 6
- GSM9192092 Mes cells day 9 rep 1 Mes cells day 9
- GSM9192093 Mes cells day 9 rep 2 Mes cells day 9
- GSM9192094 Mes cells day 9 rep 3 Mes cells day 9
- GSM9192095 Atf3 KO Mes cells day 0 rep 1 Atf3 KO Mes cells day 0
- GSM9192096 Atf3 KO Mes cells day 0 rep 2 Atf3 KO Mes cells day 0
- GSM9192097 Atf3 KO Mes cells day 3 rep 1 Atf3 KO Mes cells day 3
- GSM9192098 Atf3 KO Mes cells day 3 rep 2 Atf3 KO Mes cells day 3
- GSM9192099 Atf3 KO Mes cells day 3 rep 3 Atf3 KO Mes cells day 3
- GSM9192100 Atf3 KO Mes cells day 6 rep 1 Atf3 KO Mes cells day 6
- GSM9192101 Atf3 KO Mes cells day 6 rep 2 Atf3 KO Mes cells day 6
- GSM9192102 Atf3 KO Mes cells day 6 rep 3 Atf3 KO Mes cells day 6
- GSM9192103 Atf3 KO Mes cells day 9 rep 1 Atf3 KO Mes cells day 9
- GSM9192104 Atf3 KO Mes cells day 9 rep 2 Atf3 KO Mes cells day 9
- GSM9192105 Atf3 KO Mes cells day 9 rep 3 Atf3 KO Mes cells day 9
- GSM9202732 Atf3 KO Mes cells day 0 rep 3 Atf3 KO Mes cells day 0
- GSE301140 Dual Programmed Death Receptor-1 and Vascular Endothelial Growth Factor Receptor-2 Blockade Promotes Vascular Normalization and Enhances Antitumor Immune Responses in Hepatocellular Carcinoma 18 samples shares endothelial, promotes, enhances
- GSE243869 KMT2C deficiency enhances HSC mobilization and granulocyte bias in response to G-CSF 78 samples shares deficiency, enhances
- GSE254704 Skeletal muscle cystathionine γ-lyase deficiency promotes obesity and insulin resistance and results in hyperglycemia and skeletal muscle injury upon HFD in mice 32 samples shares deficiency, promotes
- GSE327619 Murine Endothelial Chromatin Remodeling Enzymes Modulate Plasmin Activity and Sterile Inflammation to Prevent Lethal Embryonic Liver Deterioration 24 samples shares endothelial, embryonic
- GSE329160 Translocator Protein Deficiency Promotes Splenomegaly with Extramedullary Hematopoiesis after Sepsis 24 samples shares deficiency, promotes
- GSE301448 Epigenetic Reactivation of CNS Endothelial Developmental Programs Triggers Adult Brain Angiogenesis, Promotes Post-Stroke Revascularization and Neuroregeneration [RNAseq-Stroke] 18 samples shares endothelial, promotes
- GSE298695 Mechanosensing by endothelial Piezo1 promotes liver regeneration after partial hepatectomy via ATF2-ID1-Wnt2 pathway 16 samples shares endothelial, promotes
- GSE293719 Beclin1 Deficiency Unlocks Cardiac Lineage Commitment through Convergent Wnt and BMP Signaling Activation 16 samples shares deficiency, commitment
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.