ChREBP Is Dispensable for Myofiber Type-switch but Promotes Skeletal Muscle Regeneration
RNA-seq (gene expression) · mouse · 62 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 62 samples: 62 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ChREBP Is Dispensable for Myofiber Type Switch but Promotes Skeletal Muscle RegenerationNutrients · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE319093_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1422086 and SRA study SRP676250. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 4 samples read as cases, 8 as controls.
How we read this: Read from 62 sample titles: 62 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9510530 GC-KO-59,ChMKO mice
- GSM9510531 GC-KO-60,ChMKO mice
- GSM9510532 GC-KO-61,ChMKO mice
- GSM9510533 GC-KO-72,ChMKO mice
- GSM9510534 GC-KO-74,ChMKO mice
- GSM9510535 GC-WT-57,ChMKO mice
- GSM9510536 GC-WT-58,ChMKO mice
- GSM9510537 GC-WT-69,ChMKO mice
- GSM9510538 GC-WT-70,ChMKO mice
- GSM9510539 GC-WT-71,ChMKO mice
- GSM9510540 SOL-KO-59,ChMKO mice
- GSM9510541 SOL-KO-60,ChMKO mice
- GSM9510542 SOL-KO-61,ChMKO mice
- GSM9510543 SOL-KO-72,ChMKO mice
- GSM9510544 SOL-KO-74,ChMKO mice
- GSM9510545 SOL-WT-57,ChMKO mice
- GSM9510546 SOL-WT-58,ChMKO mice
- GSM9510547 SOL-WT-59,ChMKO mice
- GSM9510548 SOL-WT-70,ChMKO mice
- GSM9510549 SOL-WT-71,ChMKO mice
- GSM9510550 N_KO_370,ChMKO mice
- GSM9510551 N_KO_374,ChMKO mice
- GSM9510552 N_KO_375,ChMKO mice
- GSM9510553 N_KO_380,ChMKO mice
- GSM9510554 N_WTc368,ChMKO mice
- GSM9510555 N_WTc369,ChMKO mice
- GSM9510556 N_WTc397,ChMKO mice
- GSM9510557 N_WTc401,ChMKO mice
- GSM9510558 H_KOc332,ChMKO mice
- GSM9510559 H_KOc333,ChMKO mice
- GSM9510560 H_KOc340,ChMKO mice
- GSM9510561 H_KOc345,ChMKO mice
- GSM9510562 H_WTc341,ChMKO mice
- GSM9510563 H_WTc348,ChMKO mice
- GSM9510564 H_WTc360,ChMKO mice
- GSM9510565 H_WTc361,ChMKO mice
- GSM9510566 KO_C291,ChMKO mice
- GSM9510567 KO_C293,ChMKO mice
- GSM9510568 KO_C299,ChMKO mice
- GSM9510569 KO_C309,ChMKO mice
+ 22 more — browse all 62 samples with per-sample file links →
- GSE329069 Deletion of P311 enhances regeneration in aged skeletal muscle 9 samples shares regeneration, skeletal, muscle
- GSE248916 Metabolic Promotion of Adult and Aging Skeletal Muscle Regeneration by the Serine Biosynthesis Pathway 30 samples shares regeneration, skeletal, muscle
- GSE292230 Genomic characterization of mouse hindlimb skeletal muscles with divergent slow myofiber content at an embryonic and adult time point [ATAC-Seq] 24 samples shares myofiber, skeletal, muscle
- GSE315987 M-cadherin regulates the formation of adherens junctions and secondary myofibers during fetal myogenesis to determine adult myofiber number and muscle mass 88 samples shares myofiber, muscle
- GSE269634 Triggering AHR resolves TGF-β1 induced fibroblast activation and promotes AT1 cell regeneration in alveolar organoids 32 samples shares regeneration, promotes
- GSE301448 Epigenetic Reactivation of CNS Endothelial Developmental Programs Triggers Adult Brain Angiogenesis, Promotes Post-Stroke Revascularization and Neuroregeneration [RNAseq-Stroke] 18 samples shares regeneration, promotes
- GSE298695 Mechanosensing by endothelial Piezo1 promotes liver regeneration after partial hepatectomy via ATF2-ID1-Wnt2 pathway 16 samples shares regeneration, promotes
- GSE317252 Enhanced mitophagy promotes lung repair and regeneration by restoring epithelial metabolic fitness [RNA-Seq] 16 samples shares regeneration, promotes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.